Package | Program/function/option | Link function | Obtaining the random effects | Handling ordinal proportional odds model | Modeling cross-classified model | Other than normal random effects | |
---|---|---|---|---|---|---|---|
 |  | Probit model | Log (-log) model |  |  |  |  |
R | LME4 | Â | Â | X | Â | X | Â |
 | MCMCglmm | X |  | X | X* | X |  |
Stata | GLLAMM | X | X | X | X | Â | Â |
MIXOR | MIXOR | X | X | Â | X | Â | Â |
SAS | NLMIXED | X | X | X | X | Â | Â |
 | GLIMMIX | X | X | X | X | X |  |
 | MCMC | X | X | X |  |  |  |
MLwiN | [R]IGLS or MCMC | X | X | X | X | X | Â |
WinBUGS | MCMC | X | X | X | X | X | X |